STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL57304.1RHS repeat-associated core domain-containing protein. (1584 aa)    
Predicted Functional Partners:
SHL57275.1
N-acetylmuramoyl-L-alanine amidase.
       0.773
SHL57336.1
Hypothetical protein.
       0.718
SHK63394.1
Hypothetical protein.
  
 
 0.619
SHL57242.1
Peptidoglycan/xylan/chitin deacetylase, PgdA/CDA1 family.
       0.460
SHL51611.1
Hypothetical protein.
   
   0.459
smc
Condensin subunit Smc; Required for chromosome condensation and partitioning. Belongs to the SMC family.
   
   0.459
SHN33153.1
Hypothetical protein.
  
   0.451
SHL06742.1
Hypothetical protein.
   
   0.435
SHL98188.1
Hypothetical protein.
   
   0.435
SHM51213.1
Protein of unknown function.
   
   0.435
Your Current Organism:
Streptomyces paucisporeus
NCBI taxonomy Id: 310782
Other names: CGMCC 4.2025, JCM 13276, NBRC 102072, S. paucisporeus, Streptomyces paucisporeus Xu et al. 2006
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