Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHL84131.1 | SHL84309.1 | SAMN05216499_106215 | SAMN05216499_106220 | Cell division protein FtsW; Belongs to the SEDS family. | Peptidoglycan synthetase FtsI. | 0.972 |
SHL84131.1 | SHL84389.1 | SAMN05216499_106215 | SAMN05216499_106222 | Cell division protein FtsW; Belongs to the SEDS family. | Hypothetical protein. | 0.739 |
SHL84131.1 | ftsQ | SAMN05216499_106215 | SAMN05216499_106213 | Cell division protein FtsW; Belongs to the SEDS family. | Cell division protein FtsQ; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily. | 0.977 |
SHL84131.1 | ftsZ | SAMN05216499_106215 | SAMN05216499_106212 | Cell division protein FtsW; Belongs to the SEDS family. | Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. | 0.959 |
SHL84131.1 | murC | SAMN05216499_106215 | SAMN05216499_11443 | Cell division protein FtsW; Belongs to the SEDS family. | UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.961 |
SHL84131.1 | murD | SAMN05216499_106215 | SAMN05216499_106216 | Cell division protein FtsW; Belongs to the SEDS family. | UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.991 |
SHL84131.1 | murF | SAMN05216499_106215 | SAMN05216499_106218 | Cell division protein FtsW; Belongs to the SEDS family. | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.991 |
SHL84131.1 | murG-2 | SAMN05216499_106215 | SAMN05216499_106214 | Cell division protein FtsW; Belongs to the SEDS family. | UDP-N-acetylglucosamine-N- acetylmuramylpentapeptide N-acetylglucosamine transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.960 |
SHL84131.1 | secY | SAMN05216499_106215 | SAMN05216499_101151 | Cell division protein FtsW; Belongs to the SEDS family. | Protein translocase subunit secY/sec61 alpha; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.530 |
SHL84309.1 | SHL84131.1 | SAMN05216499_106220 | SAMN05216499_106215 | Peptidoglycan synthetase FtsI. | Cell division protein FtsW; Belongs to the SEDS family. | 0.972 |
SHL84309.1 | SHL84389.1 | SAMN05216499_106220 | SAMN05216499_106222 | Peptidoglycan synthetase FtsI. | Hypothetical protein. | 0.965 |
SHL84309.1 | ftsQ | SAMN05216499_106220 | SAMN05216499_106213 | Peptidoglycan synthetase FtsI. | Cell division protein FtsQ; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily. | 0.992 |
SHL84309.1 | ftsZ | SAMN05216499_106220 | SAMN05216499_106212 | Peptidoglycan synthetase FtsI. | Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. | 0.934 |
SHL84309.1 | murC | SAMN05216499_106220 | SAMN05216499_11443 | Peptidoglycan synthetase FtsI. | UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.879 |
SHL84309.1 | murD | SAMN05216499_106220 | SAMN05216499_106216 | Peptidoglycan synthetase FtsI. | UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.974 |
SHL84309.1 | murF | SAMN05216499_106220 | SAMN05216499_106218 | Peptidoglycan synthetase FtsI. | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.981 |
SHL84309.1 | murG-2 | SAMN05216499_106220 | SAMN05216499_106214 | Peptidoglycan synthetase FtsI. | UDP-N-acetylglucosamine-N- acetylmuramylpentapeptide N-acetylglucosamine transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.960 |
SHL84389.1 | SHL84131.1 | SAMN05216499_106222 | SAMN05216499_106215 | Hypothetical protein. | Cell division protein FtsW; Belongs to the SEDS family. | 0.739 |
SHL84389.1 | SHL84309.1 | SAMN05216499_106222 | SAMN05216499_106220 | Hypothetical protein. | Peptidoglycan synthetase FtsI. | 0.965 |
SHL84389.1 | SHL99064.1 | SAMN05216499_106222 | SAMN05216499_107197 | Hypothetical protein. | Cell division protein FtsB. | 0.413 |
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