Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHK90645.1 | SHL84309.1 | SAMN05216499_10240 | SAMN05216499_106220 | Cell division protein FtsX; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily. | Peptidoglycan synthetase FtsI. | 0.571 |
SHK90645.1 | SHN25231.1 | SAMN05216499_10240 | SAMN05216499_1298 | Cell division protein FtsX; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily. | DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family; Belongs to the FtsK/SpoIIIE/SftA family. | 0.567 |
SHK90645.1 | ftsE | SAMN05216499_10240 | SAMN05216499_10239 | Cell division protein FtsX; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily. | Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division. | 0.999 |
SHK90645.1 | ftsZ | SAMN05216499_10240 | SAMN05216499_106212 | Cell division protein FtsX; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily. | Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. | 0.718 |
SHK90645.1 | mraZ | SAMN05216499_10240 | SAMN05216499_106224 | Cell division protein FtsX; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily. | MraZ protein; Belongs to the MraZ family. | 0.627 |
SHL84309.1 | SHK90645.1 | SAMN05216499_106220 | SAMN05216499_10240 | Peptidoglycan synthetase FtsI. | Cell division protein FtsX; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily. | 0.571 |
SHL84309.1 | SHL84389.1 | SAMN05216499_106220 | SAMN05216499_106222 | Peptidoglycan synthetase FtsI. | Hypothetical protein. | 0.965 |
SHL84309.1 | SHN25231.1 | SAMN05216499_106220 | SAMN05216499_1298 | Peptidoglycan synthetase FtsI. | DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family; Belongs to the FtsK/SpoIIIE/SftA family. | 0.833 |
SHL84309.1 | SHN34536.1 | SAMN05216499_106220 | SAMN05216499_14130 | Peptidoglycan synthetase FtsI. | Hypothetical protein. | 0.457 |
SHL84309.1 | ftsE | SAMN05216499_106220 | SAMN05216499_10239 | Peptidoglycan synthetase FtsI. | Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division. | 0.617 |
SHL84309.1 | ftsZ | SAMN05216499_106220 | SAMN05216499_106212 | Peptidoglycan synthetase FtsI. | Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. | 0.934 |
SHL84309.1 | mraZ | SAMN05216499_106220 | SAMN05216499_106224 | Peptidoglycan synthetase FtsI. | MraZ protein; Belongs to the MraZ family. | 0.631 |
SHL84309.1 | murF | SAMN05216499_106220 | SAMN05216499_106218 | Peptidoglycan synthetase FtsI. | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.981 |
SHL84309.1 | rsmH | SAMN05216499_106220 | SAMN05216499_106223 | Peptidoglycan synthetase FtsI. | 16S rRNA (cytosine1402-N4)-methyltransferase; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. | 0.908 |
SHL84389.1 | SHL84309.1 | SAMN05216499_106222 | SAMN05216499_106220 | Hypothetical protein. | Peptidoglycan synthetase FtsI. | 0.965 |
SHL84389.1 | ftsZ | SAMN05216499_106222 | SAMN05216499_106212 | Hypothetical protein. | Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. | 0.735 |
SHL84389.1 | mraZ | SAMN05216499_106222 | SAMN05216499_106224 | Hypothetical protein. | MraZ protein; Belongs to the MraZ family. | 0.780 |
SHL84389.1 | murF | SAMN05216499_106222 | SAMN05216499_106218 | Hypothetical protein. | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.792 |
SHL84389.1 | rsmH | SAMN05216499_106222 | SAMN05216499_106223 | Hypothetical protein. | 16S rRNA (cytosine1402-N4)-methyltransferase; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. | 0.931 |
SHN25231.1 | SHK90645.1 | SAMN05216499_1298 | SAMN05216499_10240 | DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family; Belongs to the FtsK/SpoIIIE/SftA family. | Cell division protein FtsX; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily. | 0.567 |
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