STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL77976.1Hypothetical protein. (456 aa)    
Predicted Functional Partners:
SHK63589.1
Hypothetical protein.
  
 
 0.939
SHK75451.1
Hypothetical protein.
  
 
  0.885
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.872
SHM44333.1
Conserved hypothetical protein.
    
 0.802
SHM98451.1
ADP-ribosylglycohydrolase.
   
 0.788
SHN22114.1
Acetoin utilization protein AcuC.
    
  0.776
SHM76466.1
Hypothetical protein.
  
     0.773
SHN13917.1
Hypothetical protein.
  
     0.773
SHL98232.1
Xanthomonas XOO_2897-like deaminase.
  
     0.772
SHN14449.1
Uncharacterized membrane protein YphA, DoxX/SURF4 family.
  
    0.771
Your Current Organism:
Streptomyces paucisporeus
NCBI taxonomy Id: 310782
Other names: CGMCC 4.2025, JCM 13276, NBRC 102072, S. paucisporeus, Streptomyces paucisporeus Xu et al. 2006
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.