STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL79072.1Transcriptional regulator, IclR family. (256 aa)    
Predicted Functional Partners:
SHM46410.1
Urea carboxylase.
  
 
  0.914
SHL51437.1
Sensor histidine kinase inhibitor, KipI family.
  
    0.894
SHL79035.1
NADP-dependent aldehyde dehydrogenase.
    
  0.810
SHK91565.1
DNA-binding transcriptional regulator, IclR family.
  
     0.678
SHK93670.1
Transcriptional regulator, IclR family.
  
     0.649
SHL79118.1
Methyltransferase domain-containing protein.
       0.632
SHM43304.1
Protein N-acetyltransferase, RimJ/RimL family.
       0.603
SHL79155.1
RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.553
SHM70783.1
Transcriptional regulator, IclR family.
  
     0.525
SHL79189.1
Hypothetical protein.
       0.504
Your Current Organism:
Streptomyces paucisporeus
NCBI taxonomy Id: 310782
Other names: CGMCC 4.2025, JCM 13276, NBRC 102072, S. paucisporeus, Streptomyces paucisporeus Xu et al. 2006
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.