SHL99969.1 protein (Streptomyces paucisporeus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SHL99969.1

Anti-sigma regulatory factor (Ser/Thr protein kinase). (165 aa)

Predicted Functional Partners:

SHL99937.1

0.911

SHM59901.1

0.841

SHN35044.1

0.834

SHK57024.1

0.828

SHM62552.1

0.823

SHK59163.1

0.800

SHN35016.1

0.796

SHM32764.1

0.790

SHL49352.1

0.770

SHN36546.1

0.755

Your Current Organism:

Streptomyces paucisporeus

NCBI taxonomy Id: 310782
Other names: CGMCC 4.2025, JCM 13276, NBRC 102072, S. paucisporeus, Streptomyces paucisporeus Xu et al. 2006

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SHK57024.1	SHK59163.1	SAMN05216499_10164	SAMN05216499_101119	Histidine kinase-like ATPase domain-containing protein.	Anti-sigma regulatory factor (Ser/Thr protein kinase).	0.860
SHK57024.1	SHL49352.1	SAMN05216499_10164	SAMN05216499_104267	Histidine kinase-like ATPase domain-containing protein.	Histidine kinase-like ATPase domain-containing protein.	0.640
SHK57024.1	SHL99937.1	SAMN05216499_10164	SAMN05216499_107223	Histidine kinase-like ATPase domain-containing protein.	Anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family.	0.407
SHK57024.1	SHL99969.1	SAMN05216499_10164	SAMN05216499_107224	Histidine kinase-like ATPase domain-containing protein.	Anti-sigma regulatory factor (Ser/Thr protein kinase).	0.828
SHK57024.1	SHM59901.1	SAMN05216499_10164	SAMN05216499_112137	Histidine kinase-like ATPase domain-containing protein.	Anti-sigma regulatory factor (Ser/Thr protein kinase).	0.728
SHK57024.1	SHN35044.1	SAMN05216499_10164	SAMN05216499_14225	Histidine kinase-like ATPase domain-containing protein.	Anti-sigma regulatory factor (Ser/Thr protein kinase).	0.762
SHK57024.1	SHN36546.1	SAMN05216499_10164	SAMN05216499_14719	Histidine kinase-like ATPase domain-containing protein.	Anti-sigma regulatory factor (Ser/Thr protein kinase).	0.743
SHK59163.1	SHK57024.1	SAMN05216499_101119	SAMN05216499_10164	Anti-sigma regulatory factor (Ser/Thr protein kinase).	Histidine kinase-like ATPase domain-containing protein.	0.860
SHK59163.1	SHL49352.1	SAMN05216499_101119	SAMN05216499_104267	Anti-sigma regulatory factor (Ser/Thr protein kinase).	Histidine kinase-like ATPase domain-containing protein.	0.608
SHK59163.1	SHL99937.1	SAMN05216499_101119	SAMN05216499_107223	Anti-sigma regulatory factor (Ser/Thr protein kinase).	Anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family.	0.887
SHK59163.1	SHL99969.1	SAMN05216499_101119	SAMN05216499_107224	Anti-sigma regulatory factor (Ser/Thr protein kinase).	Anti-sigma regulatory factor (Ser/Thr protein kinase).	0.800
SHK59163.1	SHM32764.1	SAMN05216499_101119	SAMN05216499_11067	Anti-sigma regulatory factor (Ser/Thr protein kinase).	Histidine kinase-like ATPase domain-containing protein.	0.428
SHK59163.1	SHM59901.1	SAMN05216499_101119	SAMN05216499_112137	Anti-sigma regulatory factor (Ser/Thr protein kinase).	Anti-sigma regulatory factor (Ser/Thr protein kinase).	0.750
SHK59163.1	SHM62552.1	SAMN05216499_101119	SAMN05216499_112209	Anti-sigma regulatory factor (Ser/Thr protein kinase).	Histidine kinase-like ATPase domain-containing protein.	0.844
SHK59163.1	SHN35016.1	SAMN05216499_101119	SAMN05216499_14220	Anti-sigma regulatory factor (Ser/Thr protein kinase).	Histidine kinase-like ATPase domain-containing protein.	0.858
SHK59163.1	SHN35044.1	SAMN05216499_101119	SAMN05216499_14225	Anti-sigma regulatory factor (Ser/Thr protein kinase).	Anti-sigma regulatory factor (Ser/Thr protein kinase).	0.471
SHK59163.1	SHN36546.1	SAMN05216499_101119	SAMN05216499_14719	Anti-sigma regulatory factor (Ser/Thr protein kinase).	Anti-sigma regulatory factor (Ser/Thr protein kinase).	0.642
SHL49352.1	SHK57024.1	SAMN05216499_104267	SAMN05216499_10164	Histidine kinase-like ATPase domain-containing protein.	Histidine kinase-like ATPase domain-containing protein.	0.640
SHL49352.1	SHK59163.1	SAMN05216499_104267	SAMN05216499_101119	Histidine kinase-like ATPase domain-containing protein.	Anti-sigma regulatory factor (Ser/Thr protein kinase).	0.608
SHL49352.1	SHL99937.1	SAMN05216499_104267	SAMN05216499_107223	Histidine kinase-like ATPase domain-containing protein.	Anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family.	0.578