STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL94383.1Pyridoxamine 5'-phosphate oxidase. (177 aa)    
Predicted Functional Partners:
SHM26133.1
RibD C-terminal domain-containing protein.
  
    0.559
SHM85188.1
Truncated hemoglobin YjbI.
  
    0.537
SHN34894.1
CsbD-like; Belongs to the UPF0337 (CsbD) family.
  
    0.525
SHL24753.1
Hypothetical protein.
  
    0.524
SHL87563.1
Hypothetical protein.
   
    0.499
SHN27564.1
Hypothetical protein.
  
     0.478
SHL94344.1
AMP-binding enzyme.
       0.477
SHL94419.1
Ribosomal protein S18 acetylase RimI.
  
    0.475
SHN24515.1
Hemerythrin HHE cation binding domain-containing protein.
  
     0.472
arcA
Arginine deiminase.
   
    0.465
Your Current Organism:
Streptomyces paucisporeus
NCBI taxonomy Id: 310782
Other names: CGMCC 4.2025, JCM 13276, NBRC 102072, S. paucisporeus, Streptomyces paucisporeus Xu et al. 2006
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.