STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM12053.1SagB-type dehydrogenase domain-containing protein. (573 aa)    
Predicted Functional Partners:
SHM49407.1
uroporphyrinogen-III C-methyltransferase; Belongs to the precorrin methyltransferase family.
    
 0.748
SHN22005.1
uroporphyrinogen-III synthase.
  
 
 0.697
SHM12515.1
Phthiocerol/phenolphthiocerol synthesis type-I polyketide synthase C.
  
 0.659
SHM83246.1
Phosphopantetheine attachment site.
  
 
 0.647
SHM06825.1
Ribosomal protein S12 methylthiotransferase accessory factor.
 
  
 0.640
SHK73746.1
Adenylyltransferase and sulfurtransferase.
    
  0.626
SHN17977.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
  
 
   0.605
SHL08169.1
Probable phosphoglycerate mutase.
    
  0.599
SHM61413.1
Ribosomal protein S12 methylthiotransferase accessory factor.
 
  
 0.566
SHM12693.1
AMP-binding enzyme.
 
 
 
 0.560
Your Current Organism:
Streptomyces paucisporeus
NCBI taxonomy Id: 310782
Other names: CGMCC 4.2025, JCM 13276, NBRC 102072, S. paucisporeus, Streptomyces paucisporeus Xu et al. 2006
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.