Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHK94970.1 | SHM12907.1 | SAMN05216499_102157 | SAMN05216499_108191 | Transcriptional regulator, AraC family with amidase-like domain. | AraC-type DNA-binding protein. | 0.693 |
SHK94970.1 | SHN25320.1 | SAMN05216499_102157 | SAMN05216499_12918 | Transcriptional regulator, AraC family with amidase-like domain. | AraC-type DNA-binding protein. | 0.482 |
SHL70219.1 | SHM12907.1 | SAMN05216499_105337 | SAMN05216499_108191 | Transcriptional regulator, AraC family with amidase-like domain. | AraC-type DNA-binding protein. | 0.606 |
SHL70219.1 | SHN25320.1 | SAMN05216499_105337 | SAMN05216499_12918 | Transcriptional regulator, AraC family with amidase-like domain. | AraC-type DNA-binding protein. | 0.467 |
SHL82262.1 | SHM12907.1 | SAMN05216499_106163 | SAMN05216499_108191 | Glutamate synthase (NADH) large subunit. | AraC-type DNA-binding protein. | 0.678 |
SHL82262.1 | SHM56293.1 | SAMN05216499_106163 | SAMN05216499_11241 | Glutamate synthase (NADH) large subunit. | AraC-type DNA-binding protein. | 0.678 |
SHL82262.1 | SHN01137.1 | SAMN05216499_106163 | SAMN05216499_11846 | Glutamate synthase (NADH) large subunit. | Transcriptional regulator, AraC family. | 0.678 |
SHL82262.1 | SHN25216.1 | SAMN05216499_106163 | SAMN05216499_1296 | Glutamate synthase (NADH) large subunit. | Signal transduction histidine kinase. | 0.970 |
SHL82262.1 | SHN25320.1 | SAMN05216499_106163 | SAMN05216499_12918 | Glutamate synthase (NADH) large subunit. | AraC-type DNA-binding protein. | 0.678 |
SHL82262.1 | rpoA | SAMN05216499_106163 | SAMN05216499_101159 | Glutamate synthase (NADH) large subunit. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.489 |
SHL93957.1 | SHM12907.1 | SAMN05216499_10751 | SAMN05216499_108191 | Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain. | AraC-type DNA-binding protein. | 0.631 |
SHM12907.1 | SHK94970.1 | SAMN05216499_108191 | SAMN05216499_102157 | AraC-type DNA-binding protein. | Transcriptional regulator, AraC family with amidase-like domain. | 0.693 |
SHM12907.1 | SHL70219.1 | SAMN05216499_108191 | SAMN05216499_105337 | AraC-type DNA-binding protein. | Transcriptional regulator, AraC family with amidase-like domain. | 0.606 |
SHM12907.1 | SHL82262.1 | SAMN05216499_108191 | SAMN05216499_106163 | AraC-type DNA-binding protein. | Glutamate synthase (NADH) large subunit. | 0.678 |
SHM12907.1 | SHL93957.1 | SAMN05216499_108191 | SAMN05216499_10751 | AraC-type DNA-binding protein. | Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain. | 0.631 |
SHM12907.1 | SHM12936.1 | SAMN05216499_108191 | SAMN05216499_108192 | AraC-type DNA-binding protein. | DNA-binding transcriptional activator of the SARP family. | 0.521 |
SHM12907.1 | SHM56293.1 | SAMN05216499_108191 | SAMN05216499_11241 | AraC-type DNA-binding protein. | AraC-type DNA-binding protein. | 0.607 |
SHM12907.1 | SHN01137.1 | SAMN05216499_108191 | SAMN05216499_11846 | AraC-type DNA-binding protein. | Transcriptional regulator, AraC family. | 0.561 |
SHM12907.1 | SHN25216.1 | SAMN05216499_108191 | SAMN05216499_1296 | AraC-type DNA-binding protein. | Signal transduction histidine kinase. | 0.845 |
SHM12907.1 | SHN25320.1 | SAMN05216499_108191 | SAMN05216499_12918 | AraC-type DNA-binding protein. | AraC-type DNA-binding protein. | 0.676 |
page 1 of 3