STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM13000.1Kef-type K+ transport system, membrane component KefB. (419 aa)    
Predicted Functional Partners:
SHM13061.1
FADH2 O2-dependent halogenase.
 
    0.749
SHM13028.1
Regulatory protein, luxR family.
       0.707
SHN36870.1
NAD(P)H dehydrogenase (quinone).
  
 
 0.650
SHM90449.1
Thaumatin family protein.
  
     0.468
SHM13096.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
       0.463
SHM10802.1
Thaumatin family protein.
  
     0.449
SHN25216.1
Signal transduction histidine kinase.
 
   
 0.444
SHM13129.1
2-oxoglutarate ferredoxin oxidoreductase subunit beta.
       0.427
SHM08434.1
Protein of unknown function.
  
     0.419
SHN19873.1
Phosphocarrier protein HPr.
    
  0.409
Your Current Organism:
Streptomyces paucisporeus
NCBI taxonomy Id: 310782
Other names: CGMCC 4.2025, JCM 13276, NBRC 102072, S. paucisporeus, Streptomyces paucisporeus Xu et al. 2006
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.