STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM06825.1Ribosomal protein S12 methylthiotransferase accessory factor. (648 aa)    
Predicted Functional Partners:
SHM06898.1
Lantibiotic dehydratase, C terminus.
 
  
 0.951
SHM61293.1
Thiopeptide-type bacteriocin biosynthesis domain-containing protein.
 
  
 0.816
SHM06859.1
Hypothetical protein.
       0.802
SHM06772.1
Hypothetical protein.
       0.785
SHM61376.1
SagB-type dehydrogenase domain-containing protein.
 
  
 0.765
SHM61327.1
Lantibiotic dehydratase, C terminus.
 
  
 0.658
SHM12053.1
SagB-type dehydrogenase domain-containing protein.
 
  
 0.640
SHM61449.1
Bacteriocin biosynthesis cyclodehydratase domain-containing protein.
 
     0.626
SHL20559.1
Hypothetical protein.
  
  
 0.523
SHM22262.1
Hypothetical protein.
  
  
 0.523
Your Current Organism:
Streptomyces paucisporeus
NCBI taxonomy Id: 310782
Other names: CGMCC 4.2025, JCM 13276, NBRC 102072, S. paucisporeus, Streptomyces paucisporeus Xu et al. 2006
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