STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM08264.1TIGR04222 domain-containing protein. (300 aa)    
Predicted Functional Partners:
SHM08314.1
Hypothetical protein.
 
     0.925
SHM08351.1
Hypothetical protein.
       0.773
SHM13028.1
Regulatory protein, luxR family.
  
     0.689
SHN29437.1
Regulatory protein, luxR family.
  
     0.668
SHM08224.1
Ca2+-binding protein, EF-hand superfamily.
 
     0.542
SHM80410.1
Streptomyces sporulation and cell division protein, SsgA.
  
     0.458
SHM54834.1
ATPase components of ABC transporters with duplicated ATPase domains.
  
     0.429
SHN11577.1
Hypothetical protein.
  
     0.419
SHL38576.1
ABC-2 type transport system ATP-binding protein.
  
     0.405
SHL01738.1
Tricorn protease; Degrades oligopeptides; Belongs to the peptidase S41B family.
  
     0.404
Your Current Organism:
Streptomyces paucisporeus
NCBI taxonomy Id: 310782
Other names: CGMCC 4.2025, JCM 13276, NBRC 102072, S. paucisporeus, Streptomyces paucisporeus Xu et al. 2006
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