STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM22594.1Catechol 2,3-dioxygenase. (150 aa)    
Predicted Functional Partners:
SHM58034.1
(2R)-ethylmalonyl-CoA mutase.
    
 0.809
SHM12515.1
Phthiocerol/phenolphthiocerol synthesis type-I polyketide synthase C.
  
 0.722
SHM83246.1
Phosphopantetheine attachment site.
  
 0.711
SHL24753.1
Hypothetical protein.
 
     0.685
SHN27564.1
Hypothetical protein.
  
     0.673
SHK54753.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
 0.633
SHM13096.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
 0.633
SHN05992.1
Heterodimeric methylmalonyl-CoA mutase large subunit precursor.
    
 0.626
SHM11780.1
Acyl transferase domain-containing protein.
  
 0.588
SHM22553.1
Dihydrofolate reductase.
 
    0.588
Your Current Organism:
Streptomyces paucisporeus
NCBI taxonomy Id: 310782
Other names: CGMCC 4.2025, JCM 13276, NBRC 102072, S. paucisporeus, Streptomyces paucisporeus Xu et al. 2006
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.