STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM25072.1Hypothetical protein. (498 aa)    
Predicted Functional Partners:
SHM24999.1
Hypothetical protein.
 
     0.929
SHM25032.1
DMSO/TMAO reductase YedYZ, molybdopterin-dependent catalytic subunit.
 
     0.908
SHM57248.1
Hypothetical protein.
 
   
 0.860
SHM25149.1
Hypothetical protein.
 
   
 0.852
SHM57399.1
dTDP-L-rhamnose 4-epimerase.
 
   
 0.849
SHM25224.1
dTDP-L-rhamnose 4-epimerase.
 
   
 0.846
SHM25111.1
Hypothetical protein.
     
 0.831
SHM57285.1
dTDP-L-rhamnose 4-epimerase.
 
   
 0.818
der
GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
   
    0.816
SHM25187.1
dTDP-L-rhamnose 4-epimerase.
 
   
 0.813
Your Current Organism:
Streptomyces paucisporeus
NCBI taxonomy Id: 310782
Other names: CGMCC 4.2025, JCM 13276, NBRC 102072, S. paucisporeus, Streptomyces paucisporeus Xu et al. 2006
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.