SHM32907.1 protein (Streptomyces paucisporeus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SHM32907.1

RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. (381 aa)

Predicted Functional Partners:

SHM32942.1

0.947

SHL41122.1

0.787

SHK67904.1

0.783

SHM22140.1

0.778

SHN09276.1

0.745

SHM32875.1

0.673

SHM33022.1

0.487

SHM60819.1

0.412

SHM32985.1

0.407

Your Current Organism:

Streptomyces paucisporeus

NCBI taxonomy Id: 310782
Other names: CGMCC 4.2025, JCM 13276, NBRC 102072, S. paucisporeus, Streptomyces paucisporeus Xu et al. 2006

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SHK67904.1	SHM22140.1	SAMN05216499_101348	SAMN05216499_109126	Uncharacterized conserved protein.	Uncharacterized conserved protein.	0.773
SHK67904.1	SHM32907.1	SAMN05216499_101348	SAMN05216499_11071	Uncharacterized conserved protein.	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family.	0.783
SHL41122.1	SHM32907.1	SAMN05216499_10473	SAMN05216499_11071	Uncharacterized conserved protein.	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family.	0.787
SHL41122.1	SHN09276.1	SAMN05216499_10473	SAMN05216499_12064	Uncharacterized conserved protein.	Uncharacterized conserved protein.	0.738
SHM22140.1	SHK67904.1	SAMN05216499_109126	SAMN05216499_101348	Uncharacterized conserved protein.	Uncharacterized conserved protein.	0.773
SHM22140.1	SHM32907.1	SAMN05216499_109126	SAMN05216499_11071	Uncharacterized conserved protein.	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family.	0.778
SHM32875.1	SHM32907.1	SAMN05216499_11070	SAMN05216499_11071	Protein of unknown function.	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family.	0.673
SHM32875.1	SHM32942.1	SAMN05216499_11070	SAMN05216499_11072	Protein of unknown function.	Uncharacterized conserved protein.	0.694
SHM32875.1	SHM32985.1	SAMN05216499_11070	SAMN05216499_11073	Protein of unknown function.	Peptidase family M48.	0.569
SHM32875.1	SHM33022.1	SAMN05216499_11070	SAMN05216499_11074	Protein of unknown function.	Predicted transcriptional regulator.	0.532
SHM32907.1	SHK67904.1	SAMN05216499_11071	SAMN05216499_101348	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family.	Uncharacterized conserved protein.	0.783
SHM32907.1	SHL41122.1	SAMN05216499_11071	SAMN05216499_10473	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family.	Uncharacterized conserved protein.	0.787
SHM32907.1	SHM22140.1	SAMN05216499_11071	SAMN05216499_109126	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family.	Uncharacterized conserved protein.	0.778
SHM32907.1	SHM32875.1	SAMN05216499_11071	SAMN05216499_11070	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family.	Protein of unknown function.	0.673
SHM32907.1	SHM32942.1	SAMN05216499_11071	SAMN05216499_11072	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family.	Uncharacterized conserved protein.	0.947
SHM32907.1	SHM32985.1	SAMN05216499_11071	SAMN05216499_11073	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family.	Peptidase family M48.	0.407
SHM32907.1	SHM33022.1	SAMN05216499_11071	SAMN05216499_11074	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family.	Predicted transcriptional regulator.	0.487
SHM32907.1	SHM60819.1	SAMN05216499_11071	SAMN05216499_112163	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family.	Uncharacterized conserved protein.	0.412
SHM32907.1	SHN09276.1	SAMN05216499_11071	SAMN05216499_12064	RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family.	Uncharacterized conserved protein.	0.745
SHM32942.1	SHM32875.1	SAMN05216499_11072	SAMN05216499_11070	Uncharacterized conserved protein.	Protein of unknown function.	0.694