STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM47454.1SseB protein N-terminal domain-containing protein. (244 aa)    
Predicted Functional Partners:
SHM47412.1
Type VII secretion-associated serine protease mycosin.
       0.886
SHM47374.1
Hypothetical protein.
 
     0.821
SHM47506.1
Aquaporin Z; Belongs to the MIP/aquaporin (TC 1.A.8) family.
       0.782
SHL86403.1
Menaquinol-cytochrome c reductase iron-sulfur subunit precursor.
  
     0.718
SHK98984.1
Rod shape-determining protein MreD.
  
     0.715
SHN19903.1
Hypothetical protein.
  
     0.712
SHK98816.1
Protein of unknown function.
  
   
 0.707
SHN34319.1
Hypothetical protein.
  
 0.672
SHM01175.1
Hypothetical protein.
  
     0.670
SHL29970.1
Cytochrome oxidase assembly protein ShyY1.
  
 
   0.661
Your Current Organism:
Streptomyces paucisporeus
NCBI taxonomy Id: 310782
Other names: CGMCC 4.2025, JCM 13276, NBRC 102072, S. paucisporeus, Streptomyces paucisporeus Xu et al. 2006
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.