STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM58616.1Uncharacterized membrane protein YphA, DoxX/SURF4 family. (185 aa)    
Predicted Functional Partners:
SHL63557.1
Z1 domain-containing protein.
  
  
  0.791
SHM58583.1
Protein of unknown function.
       0.773
SHM58542.1
Hypothetical protein.
       0.689
SHM58646.1
PRC-barrel domain-containing protein.
 
     0.677
SHM08929.1
Protein of unknown function.
  
     0.525
SHN31318.1
Protein of unknown function.
  
     0.523
SHM08314.1
Hypothetical protein.
  
  
 0.508
SHM57814.1
Polyketide cyclase / dehydrase and lipid transport.
  
     0.478
SHM58680.1
Hypothetical protein.
       0.461
SHN35453.1
Protein of unknown function.
  
     0.443
Your Current Organism:
Streptomyces paucisporeus
NCBI taxonomy Id: 310782
Other names: CGMCC 4.2025, JCM 13276, NBRC 102072, S. paucisporeus, Streptomyces paucisporeus Xu et al. 2006
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.