Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHK76876.1 | SHL26856.1 | SAMN05216499_101590 | SAMN05216499_103256 | Molecular chaperone DnaK. | Caspase domain-containing protein. | 0.991 |
SHK76876.1 | SHM62409.1 | SAMN05216499_101590 | SAMN05216499_112205 | Molecular chaperone DnaK. | Hypothetical protein. | 0.950 |
SHK76876.1 | SHN25216.1 | SAMN05216499_101590 | SAMN05216499_1296 | Molecular chaperone DnaK. | Signal transduction histidine kinase. | 0.953 |
SHK76876.1 | alaS | SAMN05216499_101590 | SAMN05216499_1407 | Molecular chaperone DnaK. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.791 |
SHK76876.1 | htpG | SAMN05216499_101590 | SAMN05216499_103200 | Molecular chaperone DnaK. | Molecular chaperone HtpG; Molecular chaperone. Has ATPase activity. | 0.992 |
SHK76876.1 | rpoA | SAMN05216499_101590 | SAMN05216499_101159 | Molecular chaperone DnaK. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.663 |
SHK76876.1 | rpoB | SAMN05216499_101590 | SAMN05216499_101101 | Molecular chaperone DnaK. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.476 |
SHL26856.1 | SHK76876.1 | SAMN05216499_103256 | SAMN05216499_101590 | Caspase domain-containing protein. | Molecular chaperone DnaK. | 0.991 |
SHL26856.1 | SHM62409.1 | SAMN05216499_103256 | SAMN05216499_112205 | Caspase domain-containing protein. | Hypothetical protein. | 0.794 |
SHL26856.1 | SHN25216.1 | SAMN05216499_103256 | SAMN05216499_1296 | Caspase domain-containing protein. | Signal transduction histidine kinase. | 0.976 |
SHM62296.1 | SHM62373.1 | SAMN05216499_112202 | SAMN05216499_112204 | Carbon-monoxide dehydrogenase small subunit. | PucR C-terminal helix-turn-helix domain-containing protein. | 0.765 |
SHM62296.1 | SHM62409.1 | SAMN05216499_112202 | SAMN05216499_112205 | Carbon-monoxide dehydrogenase small subunit. | Hypothetical protein. | 0.701 |
SHM62373.1 | SHM62296.1 | SAMN05216499_112204 | SAMN05216499_112202 | PucR C-terminal helix-turn-helix domain-containing protein. | Carbon-monoxide dehydrogenase small subunit. | 0.765 |
SHM62373.1 | SHM62409.1 | SAMN05216499_112204 | SAMN05216499_112205 | PucR C-terminal helix-turn-helix domain-containing protein. | Hypothetical protein. | 0.769 |
SHM62373.1 | SHN25216.1 | SAMN05216499_112204 | SAMN05216499_1296 | PucR C-terminal helix-turn-helix domain-containing protein. | Signal transduction histidine kinase. | 0.819 |
SHM62409.1 | SHK76876.1 | SAMN05216499_112205 | SAMN05216499_101590 | Hypothetical protein. | Molecular chaperone DnaK. | 0.950 |
SHM62409.1 | SHL26856.1 | SAMN05216499_112205 | SAMN05216499_103256 | Hypothetical protein. | Caspase domain-containing protein. | 0.794 |
SHM62409.1 | SHM62296.1 | SAMN05216499_112205 | SAMN05216499_112202 | Hypothetical protein. | Carbon-monoxide dehydrogenase small subunit. | 0.701 |
SHM62409.1 | SHM62373.1 | SAMN05216499_112205 | SAMN05216499_112204 | Hypothetical protein. | PucR C-terminal helix-turn-helix domain-containing protein. | 0.769 |
SHM62409.1 | SHN25216.1 | SAMN05216499_112205 | SAMN05216499_1296 | Hypothetical protein. | Signal transduction histidine kinase. | 0.935 |
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