STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM56330.1Cupin. (134 aa)    
Predicted Functional Partners:
SHM56293.1
AraC-type DNA-binding protein.
     0.991
SHN25216.1
Signal transduction histidine kinase.
    
 0.825
SHM56374.1
Uncharacterized membrane protein.
 
     0.823
SHL82262.1
Glutamate synthase (NADH) large subunit.
    
  0.678
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.623
SHM56244.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.603
SHN28255.1
Regulatory protein, luxR family.
  
     0.496
SHN36295.1
Transcriptional regulator.
  
     0.485
SHN21554.1
DNA-binding transcriptional regulator, MarR family.
  
    0.475
SHM80773.1
Iron-containing redox enzyme.
  
     0.467
Your Current Organism:
Streptomyces paucisporeus
NCBI taxonomy Id: 310782
Other names: CGMCC 4.2025, JCM 13276, NBRC 102072, S. paucisporeus, Streptomyces paucisporeus Xu et al. 2006
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.