STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM58352.1Phytoene dehydrogenase-related protein. (476 aa)    
Predicted Functional Partners:
SHN21897.1
Phytoene synthase.
  
 
 0.618
SHN30950.1
Farnesyl-diphosphate farnesyltransferase.
  
 
 0.618
SHN30963.1
Squalene synthase HpnC.
  
 
 0.618
SHL78432.1
Protoporphyrin IX magnesium-chelatase.
  
 
 0.588
SHM58399.1
F420-dependent oxidoreductase, CPS_4043 family.
       0.583
SHM12515.1
Phthiocerol/phenolphthiocerol synthesis type-I polyketide synthase C.
    
 0.515
SHM83246.1
Phosphopantetheine attachment site.
    
 0.515
SHM58433.1
Dihydropyrimidinase.
       0.510
SHM58470.1
4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.504
SHM58509.1
N-carbamoylputrescine amidase.
  
    0.503
Your Current Organism:
Streptomyces paucisporeus
NCBI taxonomy Id: 310782
Other names: CGMCC 4.2025, JCM 13276, NBRC 102072, S. paucisporeus, Streptomyces paucisporeus Xu et al. 2006
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.