Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHK63165.1 | SHM70081.1 | SAMN05216499_101216 | SAMN05216499_113124 | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | ATP-dependent DNA helicase RecG. | 0.712 |
SHK63165.1 | mutM | SAMN05216499_101216 | SAMN05216499_113117 | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | DNA-(apurinic or apyrimidinic site) lyase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | 0.507 |
SHK63165.1 | recA | SAMN05216499_101216 | SAMN05216499_12923 | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.962 |
SHM69911.1 | SHM70043.1 | SAMN05216499_113120 | SAMN05216499_113123 | Uncharacterized protein. | 16S rRNA (guanine966-N2)-methyltransferase. | 0.749 |
SHM69911.1 | SHM70081.1 | SAMN05216499_113120 | SAMN05216499_113124 | Uncharacterized protein. | ATP-dependent DNA helicase RecG. | 0.706 |
SHM69911.1 | SHM70126.1 | SAMN05216499_113120 | SAMN05216499_113125 | Uncharacterized protein. | DAK2 domain-containing protein. | 0.691 |
SHM69911.1 | coaD | SAMN05216499_113120 | SAMN05216499_113122 | Uncharacterized protein. | Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | 0.762 |
SHM69911.1 | mutM | SAMN05216499_113120 | SAMN05216499_113117 | Uncharacterized protein. | DNA-(apurinic or apyrimidinic site) lyase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | 0.818 |
SHM69911.1 | rnc | SAMN05216499_113120 | SAMN05216499_113118 | Uncharacterized protein. | RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.952 |
SHM69911.1 | rpmF | SAMN05216499_113120 | SAMN05216499_113119 | Uncharacterized protein. | LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family. | 0.994 |
SHM70043.1 | SHM69911.1 | SAMN05216499_113123 | SAMN05216499_113120 | 16S rRNA (guanine966-N2)-methyltransferase. | Uncharacterized protein. | 0.749 |
SHM70043.1 | SHM70081.1 | SAMN05216499_113123 | SAMN05216499_113124 | 16S rRNA (guanine966-N2)-methyltransferase. | ATP-dependent DNA helicase RecG. | 0.798 |
SHM70043.1 | SHM70126.1 | SAMN05216499_113123 | SAMN05216499_113125 | 16S rRNA (guanine966-N2)-methyltransferase. | DAK2 domain-containing protein. | 0.795 |
SHM70043.1 | coaD | SAMN05216499_113123 | SAMN05216499_113122 | 16S rRNA (guanine966-N2)-methyltransferase. | Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | 0.989 |
SHM70043.1 | mutM | SAMN05216499_113123 | SAMN05216499_113117 | 16S rRNA (guanine966-N2)-methyltransferase. | DNA-(apurinic or apyrimidinic site) lyase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | 0.731 |
SHM70043.1 | rnc | SAMN05216499_113123 | SAMN05216499_113118 | 16S rRNA (guanine966-N2)-methyltransferase. | RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.755 |
SHM70043.1 | rpmF | SAMN05216499_113123 | SAMN05216499_113119 | 16S rRNA (guanine966-N2)-methyltransferase. | LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family. | 0.749 |
SHM70081.1 | SHK63165.1 | SAMN05216499_113124 | SAMN05216499_101216 | ATP-dependent DNA helicase RecG. | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | 0.712 |
SHM70081.1 | SHM69911.1 | SAMN05216499_113124 | SAMN05216499_113120 | ATP-dependent DNA helicase RecG. | Uncharacterized protein. | 0.706 |
SHM70081.1 | SHM70043.1 | SAMN05216499_113124 | SAMN05216499_113123 | ATP-dependent DNA helicase RecG. | 16S rRNA (guanine966-N2)-methyltransferase. | 0.798 |
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