STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM83497.1Gas vesicle synthesis protein GvpL/GvpF. (282 aa)    
Predicted Functional Partners:
SHM83477.1
Gas vesicle protein.
 
   
 0.976
SHM83517.1
Gas vesicle protein; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth.
 
   
 0.976
SHM83459.1
Gas vesicle protein K.
 
   
 0.975
SHM83590.1
Gas vesicle protein G.
 
   
 0.975
SHM83618.1
Gas vesicle synthesis protein GvpL/GvpF.
 
   
 0.974
gvpA
Gas vesicle protein; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure.
 
   
 0.974
SHM83547.1
Polyketide cyclase / dehydrase and lipid transport.
 
     0.968
SHM83672.1
Gas vesicle synthesis protein GvpO.
 
   
 0.958
SHM83569.1
Hypothetical protein.
 
     0.945
SHM58937.1
Transketolase.
       0.603
Your Current Organism:
Streptomyces paucisporeus
NCBI taxonomy Id: 310782
Other names: CGMCC 4.2025, JCM 13276, NBRC 102072, S. paucisporeus, Streptomyces paucisporeus Xu et al. 2006
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.