Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHL59606.1 | SHL82262.1 | SAMN05216499_10578 | SAMN05216499_106163 | AraC-type DNA-binding protein. | Glutamate synthase (NADH) large subunit. | 0.678 |
SHL59606.1 | SHM84001.1 | SAMN05216499_10578 | SAMN05216499_11539 | AraC-type DNA-binding protein. | Helix-turn-helix domain-containing protein. | 0.740 |
SHL59606.1 | SHN25216.1 | SAMN05216499_10578 | SAMN05216499_1296 | AraC-type DNA-binding protein. | Signal transduction histidine kinase. | 0.825 |
SHL59606.1 | rpoA | SAMN05216499_10578 | SAMN05216499_101159 | AraC-type DNA-binding protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.623 |
SHL59606.1 | rpoB | SAMN05216499_10578 | SAMN05216499_101101 | AraC-type DNA-binding protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.428 |
SHL59606.1 | rpoC | SAMN05216499_10578 | SAMN05216499_101102 | AraC-type DNA-binding protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.400 |
SHL59606.1 | rpoZ | SAMN05216499_10578 | SAMN05216499_14031 | AraC-type DNA-binding protein. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.400 |
SHL82262.1 | SHL59606.1 | SAMN05216499_106163 | SAMN05216499_10578 | Glutamate synthase (NADH) large subunit. | AraC-type DNA-binding protein. | 0.678 |
SHL82262.1 | SHM84001.1 | SAMN05216499_106163 | SAMN05216499_11539 | Glutamate synthase (NADH) large subunit. | Helix-turn-helix domain-containing protein. | 0.678 |
SHL82262.1 | SHN25216.1 | SAMN05216499_106163 | SAMN05216499_1296 | Glutamate synthase (NADH) large subunit. | Signal transduction histidine kinase. | 0.970 |
SHL82262.1 | SHN36304.1 | SAMN05216499_106163 | SAMN05216499_14616 | Glutamate synthase (NADH) large subunit. | AraC-type DNA-binding protein. | 0.678 |
SHL82262.1 | rpoA | SAMN05216499_106163 | SAMN05216499_101159 | Glutamate synthase (NADH) large subunit. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.489 |
SHL82262.1 | rpoB | SAMN05216499_106163 | SAMN05216499_101101 | Glutamate synthase (NADH) large subunit. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.733 |
SHL82262.1 | rpoC | SAMN05216499_106163 | SAMN05216499_101102 | Glutamate synthase (NADH) large subunit. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.683 |
SHM84001.1 | SHL59606.1 | SAMN05216499_11539 | SAMN05216499_10578 | Helix-turn-helix domain-containing protein. | AraC-type DNA-binding protein. | 0.740 |
SHM84001.1 | SHL82262.1 | SAMN05216499_11539 | SAMN05216499_106163 | Helix-turn-helix domain-containing protein. | Glutamate synthase (NADH) large subunit. | 0.678 |
SHM84001.1 | SHM84030.1 | SAMN05216499_11539 | SAMN05216499_11540 | Helix-turn-helix domain-containing protein. | Mannose-6-phosphate isomerase, cupin superfamily. | 0.469 |
SHM84001.1 | SHN25216.1 | SAMN05216499_11539 | SAMN05216499_1296 | Helix-turn-helix domain-containing protein. | Signal transduction histidine kinase. | 0.825 |
SHM84001.1 | SHN36304.1 | SAMN05216499_11539 | SAMN05216499_14616 | Helix-turn-helix domain-containing protein. | AraC-type DNA-binding protein. | 0.694 |
SHM84001.1 | rpoA | SAMN05216499_11539 | SAMN05216499_101159 | Helix-turn-helix domain-containing protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.623 |
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