STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN01043.1Putative ABC transport system ATP-binding protein. (247 aa)    
Predicted Functional Partners:
SHK97916.1
Putative ABC transport system permease protein.
  
 0.993
SHL58799.1
Putative ABC transport system permease protein.
  0.983
SHN01020.1
Putative ABC transport system permease protein.
 
  0.937
SHN22584.1
Putative ABC transport system permease protein.
  0.876
SHN01066.1
Virulence activator alpha C-term.
 
     0.820
SHL60379.1
Putative ABC transport system permease protein.
 
  0.818
SHL98514.1
Putative ABC transport system permease protein.
 
  0.778
SHL57803.1
Putative ABC transport system permease protein.
  
  0.708
SHN21246.1
Hypothetical protein.
   
 
 0.701
SHL58866.1
Membrane fusion protein, macrolide-specific efflux system.
 
 
 0.670
Your Current Organism:
Streptomyces paucisporeus
NCBI taxonomy Id: 310782
Other names: CGMCC 4.2025, JCM 13276, NBRC 102072, S. paucisporeus, Streptomyces paucisporeus Xu et al. 2006
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