STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN02091.1DNA-binding transcriptional regulator, GntR family. (215 aa)    
Predicted Functional Partners:
SHN02106.1
4-hydroxy-tetrahydrodipicolinate synthase; Belongs to the DapA family.
 
     0.916
SHN02125.1
Dihydroxyacid dehydratase; Belongs to the IlvD/Edd family.
 
     0.908
SHN02199.1
Methane oxygenase PmoA.
 
     0.838
SHN02143.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
       0.815
SHN02161.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
       0.815
SHN02181.1
Predicted dehydrogenase.
       0.815
SHN02216.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
       0.794
SHM86794.1
DNA-binding transcriptional regulator, FadR family.
  
  
 0.761
SHN25898.1
Transcriptional regulator, GntR family.
  
  
 0.749
SHN02233.1
Pectate lyase.
       0.729
Your Current Organism:
Streptomyces paucisporeus
NCBI taxonomy Id: 310782
Other names: CGMCC 4.2025, JCM 13276, NBRC 102072, S. paucisporeus, Streptomyces paucisporeus Xu et al. 2006
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.