STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN04849.12-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway). (282 aa)    
Predicted Functional Partners:
SHN04798.1
L-fuconolactonase.
 
     0.854
SHN04871.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
  0.828
SHN04824.1
D-threo-aldose 1-dehydrogenase.
 
    0.824
SHN04774.1
Nickel-dependent lactate racemase.
       0.775
SHN04709.1
Uncharacterized protein.
       0.773
SHN04731.1
Hypothetical protein.
       0.773
SHN04752.1
Hypothetical protein.
       0.773
fumC
Fumarase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
   
 0.751
SHM44502.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
  0.732
SHN01426.1
Succinate dehydrogenase subunit A.
  
 
  0.726
Your Current Organism:
Streptomyces paucisporeus
NCBI taxonomy Id: 310782
Other names: CGMCC 4.2025, JCM 13276, NBRC 102072, S. paucisporeus, Streptomyces paucisporeus Xu et al. 2006
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.