STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN05104.1Hypothetical protein. (239 aa)    
Predicted Functional Partners:
SHN25216.1
Signal transduction histidine kinase.
 
 
 0.850
SHN05016.1
ABC-type nickel/cobalt efflux system, permease component RcnA.
 
     0.804
ribBA
GTP cyclohydrolase II /3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.720
SHN30065.1
Hypothetical protein.
  
     0.589
SHM57730.1
Hypothetical protein.
  
     0.519
SHL26635.1
AAA domain (dynein-related subfamily).
  
     0.505
SHN27736.1
Anti-sigma regulatory factor (Ser/Thr protein kinase).
  
     0.505
SHL83144.1
Hypothetical protein.
 
     0.501
SHK58514.1
Protein of unknown function.
  
     0.493
SHM48131.1
Hypothetical protein.
  
     0.476
Your Current Organism:
Streptomyces paucisporeus
NCBI taxonomy Id: 310782
Other names: CGMCC 4.2025, JCM 13276, NBRC 102072, S. paucisporeus, Streptomyces paucisporeus Xu et al. 2006
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.