STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN13531.1Hypothetical protein. (558 aa)    
Predicted Functional Partners:
SHN13545.1
AAA-like domain-containing protein.
 
  
 0.974
SHN13569.1
Hypothetical protein.
 
     0.964
SHN13556.1
Hypothetical protein.
 
     0.952
SHN22824.1
Hypothetical protein.
 
  
 0.862
SHN13584.1
Hypothetical protein.
       0.861
SHN22805.1
Hypothetical protein.
 
   
 0.861
SHN22797.1
Hypothetical protein.
 
   
 0.814
SHN22776.1
Hypothetical protein.
 
     0.762
SHN34332.1
Conjugative relaxase domain-containing protein, TrwC/TraI family.
 
   
 0.753
SHN13596.1
Hypothetical protein.
       0.750
Your Current Organism:
Streptomyces paucisporeus
NCBI taxonomy Id: 310782
Other names: CGMCC 4.2025, JCM 13276, NBRC 102072, S. paucisporeus, Streptomyces paucisporeus Xu et al. 2006
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.