SHN22077.1 protein (Streptomyces paucisporeus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SHN22077.1

1-acyl-sn-glycerol-3-phosphate acyltransferase. (367 aa)

Predicted Functional Partners:

SHN22088.1

0.960

SHM12515.1

0.831

SHL85806.1

0.759

SHL22650.1

0.738

SHL22619.1

0.721

SHN22095.1

0.721

SHN22114.1

0.697

SHN14219.1

0.692

SHN22105.1

0.686

SHN22123.1

0.676

Your Current Organism:

Streptomyces paucisporeus

NCBI taxonomy Id: 310782
Other names: CGMCC 4.2025, JCM 13276, NBRC 102072, S. paucisporeus, Streptomyces paucisporeus Xu et al. 2006

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SHL22619.1	SHL22650.1	SAMN05216499_103150	SAMN05216499_103151	Arsenite efflux ATP-binding protein ArsA.	Arsenite efflux ATP-binding protein ArsA.	0.973
SHL22619.1	SHL85806.1	SAMN05216499_103150	SAMN05216499_106261	Arsenite efflux ATP-binding protein ArsA.	Polyketide cyclase / dehydrase and lipid transport.	0.738
SHL22619.1	SHN14219.1	SAMN05216499_103150	SAMN05216499_12275	Arsenite efflux ATP-binding protein ArsA.	Helix-turn-helix.	0.724
SHL22619.1	SHN22077.1	SAMN05216499_103150	SAMN05216499_12699	Arsenite efflux ATP-binding protein ArsA.	1-acyl-sn-glycerol-3-phosphate acyltransferase.	0.721
SHL22619.1	SHN22088.1	SAMN05216499_103150	SAMN05216499_126100	Arsenite efflux ATP-binding protein ArsA.	UDP-glucose 4-epimerase.	0.661
SHL22650.1	SHL22619.1	SAMN05216499_103151	SAMN05216499_103150	Arsenite efflux ATP-binding protein ArsA.	Arsenite efflux ATP-binding protein ArsA.	0.973
SHL22650.1	SHL85806.1	SAMN05216499_103151	SAMN05216499_106261	Arsenite efflux ATP-binding protein ArsA.	Polyketide cyclase / dehydrase and lipid transport.	0.757
SHL22650.1	SHN14219.1	SAMN05216499_103151	SAMN05216499_12275	Arsenite efflux ATP-binding protein ArsA.	Helix-turn-helix.	0.647
SHL22650.1	SHN22077.1	SAMN05216499_103151	SAMN05216499_12699	Arsenite efflux ATP-binding protein ArsA.	1-acyl-sn-glycerol-3-phosphate acyltransferase.	0.738
SHL22650.1	SHN22088.1	SAMN05216499_103151	SAMN05216499_126100	Arsenite efflux ATP-binding protein ArsA.	UDP-glucose 4-epimerase.	0.672
SHL85806.1	SHL22619.1	SAMN05216499_106261	SAMN05216499_103150	Polyketide cyclase / dehydrase and lipid transport.	Arsenite efflux ATP-binding protein ArsA.	0.738
SHL85806.1	SHL22650.1	SAMN05216499_106261	SAMN05216499_103151	Polyketide cyclase / dehydrase and lipid transport.	Arsenite efflux ATP-binding protein ArsA.	0.757
SHL85806.1	SHM12515.1	SAMN05216499_106261	SAMN05216499_108180	Polyketide cyclase / dehydrase and lipid transport.	Phthiocerol/phenolphthiocerol synthesis type-I polyketide synthase C.	0.461
SHL85806.1	SHN14219.1	SAMN05216499_106261	SAMN05216499_12275	Polyketide cyclase / dehydrase and lipid transport.	Helix-turn-helix.	0.753
SHL85806.1	SHN22077.1	SAMN05216499_106261	SAMN05216499_12699	Polyketide cyclase / dehydrase and lipid transport.	1-acyl-sn-glycerol-3-phosphate acyltransferase.	0.759
SHL85806.1	SHN22088.1	SAMN05216499_106261	SAMN05216499_126100	Polyketide cyclase / dehydrase and lipid transport.	UDP-glucose 4-epimerase.	0.661
SHM12515.1	SHL85806.1	SAMN05216499_108180	SAMN05216499_106261	Phthiocerol/phenolphthiocerol synthesis type-I polyketide synthase C.	Polyketide cyclase / dehydrase and lipid transport.	0.461
SHM12515.1	SHN22077.1	SAMN05216499_108180	SAMN05216499_12699	Phthiocerol/phenolphthiocerol synthesis type-I polyketide synthase C.	1-acyl-sn-glycerol-3-phosphate acyltransferase.	0.831
SHM12515.1	SHN22088.1	SAMN05216499_108180	SAMN05216499_126100	Phthiocerol/phenolphthiocerol synthesis type-I polyketide synthase C.	UDP-glucose 4-epimerase.	0.763
SHM12515.1	SHN22114.1	SAMN05216499_108180	SAMN05216499_126103	Phthiocerol/phenolphthiocerol synthesis type-I polyketide synthase C.	Acetoin utilization protein AcuC.	0.493