STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN25884.1ABC transporter. (581 aa)    
Predicted Functional Partners:
SHN25898.1
Transcriptional regulator, GntR family.
       0.832
SHN25873.1
8-oxo-dGTP diphosphatase; Belongs to the Nudix hydrolase family.
       0.819
sigA
RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
       0.727
SHL62034.1
Putative ABC transport system ATP-binding protein.
  
     0.628
SHN32276.1
ABC-type transport system involved in multi-copper enzyme maturation, permease component.
  
     0.624
SHN25810.1
ATP-dependent DNA helicase, RecQ-like.
   
   0.617
SHN27506.1
Hypothetical protein.
  
     0.613
SHN21230.1
ABC-2 type transport system permease protein.
  
  0.572
SHN30501.1
ABC-2 type transport system permease protein.
  
  0.569
SHK69184.1
Putative ABC transport system ATP-binding protein.
  
     0.562
Your Current Organism:
Streptomyces paucisporeus
NCBI taxonomy Id: 310782
Other names: CGMCC 4.2025, JCM 13276, NBRC 102072, S. paucisporeus, Streptomyces paucisporeus Xu et al. 2006
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.