Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SHK55550.1 | SHN26695.1 | SAMN05216499_10125 | SAMN05216499_13047 | Transcriptional regulator, AlpA family. | Hypothetical protein. | 0.552 |
| SHK55550.1 | SHN30575.1 | SAMN05216499_10125 | SAMN05216499_13510 | Transcriptional regulator, AlpA family. | Site-specific recombinase XerD. | 0.832 |
| SHK55550.1 | SHN35277.1 | SAMN05216499_10125 | SAMN05216499_1438 | Transcriptional regulator, AlpA family. | Phage integrase family protein. | 0.832 |
| SHK56435.1 | SHN26695.1 | SAMN05216499_10148 | SAMN05216499_13047 | Helix-turn-helix domain-containing protein. | Hypothetical protein. | 0.578 |
| SHK56435.1 | SHN30575.1 | SAMN05216499_10148 | SAMN05216499_13510 | Helix-turn-helix domain-containing protein. | Site-specific recombinase XerD. | 0.802 |
| SHK56435.1 | SHN35277.1 | SAMN05216499_10148 | SAMN05216499_1438 | Helix-turn-helix domain-containing protein. | Phage integrase family protein. | 0.804 |
| SHK74000.1 | SHL63598.1 | SAMN05216499_101518 | SAMN05216499_105171 | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. | 0.999 |
| SHK74000.1 | SHL64433.1 | SAMN05216499_101518 | SAMN05216499_105191 | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.999 |
| SHK74000.1 | SHN26695.1 | SAMN05216499_101518 | SAMN05216499_13047 | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | Hypothetical protein. | 0.938 |
| SHK74000.1 | truB | SAMN05216499_101518 | SAMN05216499_11335 | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | tRNA pseudouridine55 synthase; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.472 |
| SHL42387.1 | SHN25609.1 | SAMN05216499_104105 | SAMN05216499_12941 | Methyltransferase domain-containing protein. | FHA domain-containing protein. | 0.599 |
| SHL42387.1 | SHN26695.1 | SAMN05216499_104105 | SAMN05216499_13047 | Methyltransferase domain-containing protein. | Hypothetical protein. | 0.544 |
| SHL63598.1 | SHK74000.1 | SAMN05216499_105171 | SAMN05216499_101518 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | 0.999 |
| SHL63598.1 | SHL64433.1 | SAMN05216499_105171 | SAMN05216499_105191 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.985 |
| SHL63598.1 | SHN25609.1 | SAMN05216499_105171 | SAMN05216499_12941 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. | FHA domain-containing protein. | 0.503 |
| SHL63598.1 | SHN26695.1 | SAMN05216499_105171 | SAMN05216499_13047 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. | Hypothetical protein. | 0.559 |
| SHL64433.1 | SHK74000.1 | SAMN05216499_105191 | SAMN05216499_101518 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | 0.999 |
| SHL64433.1 | SHL63598.1 | SAMN05216499_105191 | SAMN05216499_105171 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. | 0.985 |
| SHL64433.1 | SHN26695.1 | SAMN05216499_105191 | SAMN05216499_13047 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Hypothetical protein. | 0.789 |
| SHN25609.1 | SHL42387.1 | SAMN05216499_12941 | SAMN05216499_104105 | FHA domain-containing protein. | Methyltransferase domain-containing protein. | 0.599 |
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