STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN28660.1Hypothetical protein. (226 aa)    
Predicted Functional Partners:
SHN28630.1
Predicted arabinose efflux permease, MFS family.
       0.603
SHN28621.1
Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain.
       0.601
SHN25847.1
Protein of unknown function.
  
     0.570
SHN22067.1
Hypothetical protein.
  
     0.545
SHL31891.1
LytR cell envelope-related transcriptional attenuator.
  
     0.538
SHN28651.1
Helix-turn-helix domain-containing protein.
       0.534
SHN13917.1
Hypothetical protein.
  
     0.513
SHK66474.1
PH domain-containing protein.
  
     0.508
SHK97135.1
Hypothetical protein.
  
     0.467
SHL98232.1
Xanthomonas XOO_2897-like deaminase.
  
     0.466
Your Current Organism:
Streptomyces paucisporeus
NCBI taxonomy Id: 310782
Other names: CGMCC 4.2025, JCM 13276, NBRC 102072, S. paucisporeus, Streptomyces paucisporeus Xu et al. 2006
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.