SHN28669.1 protein (Streptomyces paucisporeus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SHN28669.1

Tryptophan 2-monooxygenase. (567 aa)

Predicted Functional Partners:

SHN28681.1

0.996

SHN22114.1

0.985

SHL24674.1

0.920

SHL99729.1

0.920

SHM85564.1

0.920

lysA

0.920

SHK70444.1

0.907

SHL63338.1

0.907

SHL42720.1

0.835

SHN18252.1

0.835

Your Current Organism:

Streptomyces paucisporeus

NCBI taxonomy Id: 310782
Other names: CGMCC 4.2025, JCM 13276, NBRC 102072, S. paucisporeus, Streptomyces paucisporeus Xu et al. 2006

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SHK70444.1	SHL42720.1	SAMN05216499_101420	SAMN05216499_104113	Helicase conserved C-terminal domain-containing protein.	Isopalmitoylresorcinol synthase.	0.528
SHK70444.1	SHN18252.1	SAMN05216499_101420	SAMN05216499_12448	Helicase conserved C-terminal domain-containing protein.	1,3,6,8-tetrahydroxynaphthalene synthase.	0.528
SHK70444.1	SHN22114.1	SAMN05216499_101420	SAMN05216499_126103	Helicase conserved C-terminal domain-containing protein.	Acetoin utilization protein AcuC.	0.966
SHK70444.1	SHN28669.1	SAMN05216499_101420	SAMN05216499_13252	Helicase conserved C-terminal domain-containing protein.	Tryptophan 2-monooxygenase.	0.907
SHL24674.1	SHL42720.1	SAMN05216499_103201	SAMN05216499_104113	Superfamily II DNA or RNA helicase, SNF2 family.	Isopalmitoylresorcinol synthase.	0.528
SHL24674.1	SHL63338.1	SAMN05216499_103201	SAMN05216499_105165	Superfamily II DNA or RNA helicase, SNF2 family.	Helicase conserved C-terminal domain-containing protein.	0.496
SHL24674.1	SHN18252.1	SAMN05216499_103201	SAMN05216499_12448	Superfamily II DNA or RNA helicase, SNF2 family.	1,3,6,8-tetrahydroxynaphthalene synthase.	0.528
SHL24674.1	SHN22114.1	SAMN05216499_103201	SAMN05216499_126103	Superfamily II DNA or RNA helicase, SNF2 family.	Acetoin utilization protein AcuC.	0.966
SHL24674.1	SHN28669.1	SAMN05216499_103201	SAMN05216499_13252	Superfamily II DNA or RNA helicase, SNF2 family.	Tryptophan 2-monooxygenase.	0.920
SHL42720.1	SHK70444.1	SAMN05216499_104113	SAMN05216499_101420	Isopalmitoylresorcinol synthase.	Helicase conserved C-terminal domain-containing protein.	0.528
SHL42720.1	SHL24674.1	SAMN05216499_104113	SAMN05216499_103201	Isopalmitoylresorcinol synthase.	Superfamily II DNA or RNA helicase, SNF2 family.	0.528
SHL42720.1	SHL63338.1	SAMN05216499_104113	SAMN05216499_105165	Isopalmitoylresorcinol synthase.	Helicase conserved C-terminal domain-containing protein.	0.528
SHL42720.1	SHN28669.1	SAMN05216499_104113	SAMN05216499_13252	Isopalmitoylresorcinol synthase.	Tryptophan 2-monooxygenase.	0.835
SHL63338.1	SHL24674.1	SAMN05216499_105165	SAMN05216499_103201	Helicase conserved C-terminal domain-containing protein.	Superfamily II DNA or RNA helicase, SNF2 family.	0.496
SHL63338.1	SHL42720.1	SAMN05216499_105165	SAMN05216499_104113	Helicase conserved C-terminal domain-containing protein.	Isopalmitoylresorcinol synthase.	0.528
SHL63338.1	SHN18252.1	SAMN05216499_105165	SAMN05216499_12448	Helicase conserved C-terminal domain-containing protein.	1,3,6,8-tetrahydroxynaphthalene synthase.	0.528
SHL63338.1	SHN22114.1	SAMN05216499_105165	SAMN05216499_126103	Helicase conserved C-terminal domain-containing protein.	Acetoin utilization protein AcuC.	0.970
SHL63338.1	SHN28669.1	SAMN05216499_105165	SAMN05216499_13252	Helicase conserved C-terminal domain-containing protein.	Tryptophan 2-monooxygenase.	0.907
SHL99729.1	SHM85564.1	SAMN05216499_107217	SAMN05216499_11588	Diaminopimelate decarboxylase.	Diaminopimelate decarboxylase.	0.937
SHL99729.1	SHN28669.1	SAMN05216499_107217	SAMN05216499_13252	Diaminopimelate decarboxylase.	Tryptophan 2-monooxygenase.	0.920