Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHK63589.1 | SHM44333.1 | SAMN05216499_101227 | SAMN05216499_11137 | Hypothetical protein. | Conserved hypothetical protein. | 0.999 |
SHK63589.1 | SHN25634.1 | SAMN05216499_101227 | SAMN05216499_12943 | Hypothetical protein. | ATP-dependent DNA helicase DinG. | 0.955 |
SHK63589.1 | SHN29107.1 | SAMN05216499_101227 | SAMN05216499_13310 | Hypothetical protein. | WD40 repeat. | 0.925 |
SHK63589.1 | rplF | SAMN05216499_101227 | SAMN05216499_101146 | Hypothetical protein. | LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.649 |
SHK63589.1 | rpoA | SAMN05216499_101227 | SAMN05216499_101159 | Hypothetical protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.972 |
SHK63589.1 | rpoZ | SAMN05216499_101227 | SAMN05216499_14031 | Hypothetical protein. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.976 |
SHM44333.1 | SHK63589.1 | SAMN05216499_11137 | SAMN05216499_101227 | Conserved hypothetical protein. | Hypothetical protein. | 0.999 |
SHM44333.1 | SHN22114.1 | SAMN05216499_11137 | SAMN05216499_126103 | Conserved hypothetical protein. | Acetoin utilization protein AcuC. | 0.915 |
SHM44333.1 | SHN29107.1 | SAMN05216499_11137 | SAMN05216499_13310 | Conserved hypothetical protein. | WD40 repeat. | 0.802 |
SHM98451.1 | SHN29107.1 | SAMN05216499_117135 | SAMN05216499_13310 | ADP-ribosylglycohydrolase. | WD40 repeat. | 0.788 |
SHM98451.1 | alaS | SAMN05216499_117135 | SAMN05216499_1407 | ADP-ribosylglycohydrolase. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.510 |
SHM98451.1 | rplF | SAMN05216499_117135 | SAMN05216499_101146 | ADP-ribosylglycohydrolase. | LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.471 |
SHN22114.1 | SHM44333.1 | SAMN05216499_126103 | SAMN05216499_11137 | Acetoin utilization protein AcuC. | Conserved hypothetical protein. | 0.915 |
SHN22114.1 | SHN29107.1 | SAMN05216499_126103 | SAMN05216499_13310 | Acetoin utilization protein AcuC. | WD40 repeat. | 0.776 |
SHN22114.1 | rplF | SAMN05216499_126103 | SAMN05216499_101146 | Acetoin utilization protein AcuC. | LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.833 |
SHN25634.1 | SHK63589.1 | SAMN05216499_12943 | SAMN05216499_101227 | ATP-dependent DNA helicase DinG. | Hypothetical protein. | 0.955 |
SHN25634.1 | SHN29107.1 | SAMN05216499_12943 | SAMN05216499_13310 | ATP-dependent DNA helicase DinG. | WD40 repeat. | 0.727 |
SHN25634.1 | rplF | SAMN05216499_12943 | SAMN05216499_101146 | ATP-dependent DNA helicase DinG. | LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.557 |
SHN25634.1 | rpoA | SAMN05216499_12943 | SAMN05216499_101159 | ATP-dependent DNA helicase DinG. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.996 |
SHN25634.1 | rpoZ | SAMN05216499_12943 | SAMN05216499_14031 | ATP-dependent DNA helicase DinG. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.997 |
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