Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHN29678.1 | SHN29688.1 | SAMN05216499_1342 | SAMN05216499_1343 | Hypothetical protein. | Hypothetical protein. | 0.558 |
SHN29688.1 | SHN29678.1 | SAMN05216499_1343 | SAMN05216499_1342 | Hypothetical protein. | Hypothetical protein. | 0.558 |
SHN29688.1 | SHN29698.1 | SAMN05216499_1343 | SAMN05216499_1344 | Hypothetical protein. | Ubiquinone/menaquinone biosynthesis C-methylase UbiE. | 0.430 |
SHN29688.1 | nusG | SAMN05216499_1343 | SAMN05216499_10194 | Hypothetical protein. | Transcription antitermination protein nusG; Participates in transcription elongation, termination and antitermination. | 0.599 |
SHN29688.1 | rplA | SAMN05216499_1343 | SAMN05216499_10197 | Hypothetical protein. | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.603 |
SHN29688.1 | rplJ | SAMN05216499_1343 | SAMN05216499_10199 | Hypothetical protein. | LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.603 |
SHN29688.1 | rplK | SAMN05216499_1343 | SAMN05216499_10196 | Hypothetical protein. | LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.603 |
SHN29688.1 | rplL | SAMN05216499_1343 | SAMN05216499_101100 | Hypothetical protein. | LSU ribosomal protein L12P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | 0.603 |
SHN29688.1 | secE | SAMN05216499_1343 | SAMN05216499_10193 | Hypothetical protein. | Preprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation. | 0.424 |
SHN29698.1 | SHN29688.1 | SAMN05216499_1344 | SAMN05216499_1343 | Ubiquinone/menaquinone biosynthesis C-methylase UbiE. | Hypothetical protein. | 0.430 |
nusG | SHN29688.1 | SAMN05216499_10194 | SAMN05216499_1343 | Transcription antitermination protein nusG; Participates in transcription elongation, termination and antitermination. | Hypothetical protein. | 0.599 |
nusG | rplA | SAMN05216499_10194 | SAMN05216499_10197 | Transcription antitermination protein nusG; Participates in transcription elongation, termination and antitermination. | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.983 |
nusG | rplJ | SAMN05216499_10194 | SAMN05216499_10199 | Transcription antitermination protein nusG; Participates in transcription elongation, termination and antitermination. | LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.995 |
nusG | rplK | SAMN05216499_10194 | SAMN05216499_10196 | Transcription antitermination protein nusG; Participates in transcription elongation, termination and antitermination. | LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.998 |
nusG | rplL | SAMN05216499_10194 | SAMN05216499_101100 | Transcription antitermination protein nusG; Participates in transcription elongation, termination and antitermination. | LSU ribosomal protein L12P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | 0.997 |
nusG | secE | SAMN05216499_10194 | SAMN05216499_10193 | Transcription antitermination protein nusG; Participates in transcription elongation, termination and antitermination. | Preprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation. | 0.990 |
rplA | SHN29688.1 | SAMN05216499_10197 | SAMN05216499_1343 | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | Hypothetical protein. | 0.603 |
rplA | nusG | SAMN05216499_10197 | SAMN05216499_10194 | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | Transcription antitermination protein nusG; Participates in transcription elongation, termination and antitermination. | 0.983 |
rplA | rplJ | SAMN05216499_10197 | SAMN05216499_10199 | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.999 |
rplA | rplK | SAMN05216499_10197 | SAMN05216499_10196 | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.999 |
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