STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFS32049.1DNA-3-methyladenine glycosylase II. (215 aa)    
Predicted Functional Partners:
SFS32062.1
Phospholipase/carboxylesterase.
    
 0.965
Xth
Exodeoxyribonuclease III.
  
 0.870
SFS91855.1
Exodeoxyribonuclease-3.
  
 0.870
SFT10646.1
AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase.
 
  
 0.868
SFS32034.1
Predicted arabinose efflux permease, MFS family.
     
 0.845
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
 
 0.697
SFS72066.1
DNA-O6-methylguanine--protein-cysteine S-methyltransferase /Transcriptional regulator Ada.
 
  
 0.607
SFS64815.1
ATP-dependent DNA helicase RecQ.
   
 
 0.562
SFT17961.1
Protein ImuB.
 
 
 0.543
SFT16532.1
precorrin-6A reductase.
       0.491
Your Current Organism:
Yangia pacifica
NCBI taxonomy Id: 311180
Other names: CGMCC 1.3455, DSM 26894, JCM 12573, Y. pacifica, Yangia pacifica Dai et al. 2006, alpha proteobacterium DX5-10, strain DX5-10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.