STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFS44668.1Phage major tail protein, TP901-1 family. (140 aa)    
Predicted Functional Partners:
SFS44589.1
TIGR02217 family protein.
 
 
   0.999
SFS44511.1
Putative phage tail protein.
 
   0.998
SFS44570.1
Phage conserved hypothetical protein BR0599.
 
 
   0.998
SFS44687.1
Protein of unknown function.
 
 
   0.998
SFS44739.1
Phage conserved hypothetical protein, phiE125 gp8 family.
 
   0.998
SFS44707.1
Head-tail adaptor.
 
 
 
 0.997
SFS44774.1
Phage major capsid protein, HK97 family.
 
 
 0.987
SFS44833.1
Phage portal protein, HK97 family.
 
 
 0.981
SFS52540.1
Phage major capsid protein, HK97 family.
 
 
 0.974
SFS44651.1
Phage tail tube protein, GTA-gp10.
 
  
 0.972
Your Current Organism:
Yangia pacifica
NCBI taxonomy Id: 311180
Other names: CGMCC 1.3455, DSM 26894, JCM 12573, Y. pacifica, Yangia pacifica Dai et al. 2006, alpha proteobacterium DX5-10, strain DX5-10
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.