STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFS57313.1Isopenicillin N synthase; Belongs to the iron/ascorbate-dependent oxidoreductase family. (333 aa)    
Predicted Functional Partners:
SFS57289.1
NitT/TauT family transport system substrate-binding protein.
 
    0.857
SFS57304.1
NitT/TauT family transport system permease protein.
 
    0.693
SFS57297.1
NitT/TauT family transport system ATP-binding protein.
 
    0.665
SFS57322.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
   
 0.637
SFS57332.1
Cytosine deaminase.
 
    0.579
SFS63447.1
Cytidine and deoxycytidylate deaminase zinc-binding region.
 
    0.536
SFS57280.1
Hypothetical protein.
       0.482
Your Current Organism:
Yangia pacifica
NCBI taxonomy Id: 311180
Other names: CGMCC 1.3455, DSM 26894, JCM 12573, Y. pacifica, Yangia pacifica Dai et al. 2006, alpha proteobacterium DX5-10, strain DX5-10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.