STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFS57408.1Signal transduction histidine kinase. (410 aa)    
Predicted Functional Partners:
SFS57401.1
Two component transcriptional regulator, LuxR family.
 
 
 0.976
SFS57416.1
Monosaccharide ABC transporter substrate-binding protein, CUT2 family.
 
  
 0.869
SFS57428.1
Monosaccharide ABC transporter membrane protein, CUT2 family; Belongs to the binding-protein-dependent transport system permease family.
 
     0.850
SFS57435.1
Monosaccharide ABC transporter membrane protein, CUT2 family (TC 3.A.1.2.-); Belongs to the binding-protein-dependent transport system permease family.
 
     0.843
SFS43371.1
Two component transcriptional regulator, LuxR family.
 
 
 0.838
SFS57424.1
Monosaccharide ABC transporter ATP-binding protein, CUT2 family (TC 3.A.1.2.-).
 
     0.814
SFT12474.1
Two component transcriptional regulator, LuxR family.
 
 
 0.699
SFT13839.1
ATP-, maltotriose-and DNA-dependent transcriptional regulator MalT.
 
 
 0.692
SFS80929.1
PAS fold-containing protein.
  
 
 0.688
SFS57440.1
Gluconolactonase.
 
     0.678
Your Current Organism:
Yangia pacifica
NCBI taxonomy Id: 311180
Other names: CGMCC 1.3455, DSM 26894, JCM 12573, Y. pacifica, Yangia pacifica Dai et al. 2006, alpha proteobacterium DX5-10, strain DX5-10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.