STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFS57674.1Protein of unknown function. (137 aa)    
Predicted Functional Partners:
SFS57664.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
     0.797
SFS57679.1
Bile acid-coenzyme A ligase.
 
     0.778
SFS57669.1
C4-dicarboxylate transporter, DctM subunit.
 
     0.745
SFS57658.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
     0.621
SFS57586.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.582
SFS57574.1
4-hydroxy-tetrahydrodipicolinate synthase; Belongs to the DapA family.
 
     0.576
SFS57653.1
4-hydroxy-tetrahydrodipicolinate synthase.
 
     0.561
SFS57568.1
4-hydroxy-tetrahydrodipicolinate synthase; Belongs to the DapA family.
 
     0.524
SFS57639.1
Acyl dehydratase.
 
     0.463
SFS57685.1
Inosine-uridine nucleoside N-ribohydrolase.
       0.444
Your Current Organism:
Yangia pacifica
NCBI taxonomy Id: 311180
Other names: CGMCC 1.3455, DSM 26894, JCM 12573, Y. pacifica, Yangia pacifica Dai et al. 2006, alpha proteobacterium DX5-10, strain DX5-10
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