STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFS65242.1Capsular polysaccharide transport system ATP-binding protein. (220 aa)    
Predicted Functional Partners:
SFS65258.1
Capsular polysaccharide transport system permease protein.
 
     0.946
SFS65273.1
Capsular polysaccharide transport system permease protein.
 
   
 0.854
SFS87743.1
Capsular polysaccharide export protein.
  
     0.723
SFS98813.1
Capsular polysaccharide transport system permease protein.
 
     0.705
SFS87715.1
Capsular polysaccharide export protein.
  
     0.700
SFS75524.1
Virginiamycin A acetyltransferase.
 
    0.551
SFS95164.1
Polysaccharide export outer membrane protein.
 
     0.546
SFS87728.1
Polysaccharide export outer membrane protein.
 
     0.468
SFS65526.1
ATP-binding cassette, subfamily B.
 
 0.467
SFS65288.1
Glycosyltransferase, GT2 family.
 
  
 0.457
Your Current Organism:
Yangia pacifica
NCBI taxonomy Id: 311180
Other names: CGMCC 1.3455, DSM 26894, JCM 12573, Y. pacifica, Yangia pacifica Dai et al. 2006, alpha proteobacterium DX5-10, strain DX5-10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.