STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFS63730.1GntR family transcriptional regulator, histidine utilization repressor. (242 aa)    
Predicted Functional Partners:
hutI
Imidazolonepropionase.
 
  
 0.904
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
 
  
 0.889
hutH
Histidine ammonia-lyase.
 
  
 0.870
SFT15257.1
Formimidoylglutamate deiminase.
  
 0.859
SFT15270.1
Hypothetical protein.
 
  
 0.827
SFS63848.1
Formiminoglutamase.
 
  
 0.808
SFS63752.1
Polar amino acid transport system ATP-binding protein.
       0.765
SFS63765.1
Polar amino acid transport system permease protein.
       0.762
SFS63781.1
Polar amino acid transport system permease protein.
       0.762
SFS56630.1
DNA-binding transcriptional regulator, GntR family.
  
     0.715
Your Current Organism:
Yangia pacifica
NCBI taxonomy Id: 311180
Other names: CGMCC 1.3455, DSM 26894, JCM 12573, Y. pacifica, Yangia pacifica Dai et al. 2006, alpha proteobacterium DX5-10, strain DX5-10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.