STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFS76206.1cation:H+ antiporter. (318 aa)    
Predicted Functional Partners:
SFS76223.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
  
  
 0.764
SFT25284.1
Citrate transporter.
 
  
 0.648
SFS96237.1
Arabinose-5-phosphate isomerase; Belongs to the SIS family. GutQ/KpsF subfamily.
    
 0.612
SFS76190.1
Serine protease SohB.
       0.566
SFT19941.1
Di-and tricarboxylate transporter.
 
  
 0.512
uvrC
Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
  
    0.499
SFS73597.1
TrkA-C domain-containing protein.
 
  
 0.496
SFS67127.1
Small conductance mechanosensitive channel.
 
    0.441
SFS70780.1
Predicted NAD/FAD-binding protein.
   
    0.434
SFS83715.1
Sodium/proton antiporter, CPA1 family.
   
 
 0.434
Your Current Organism:
Yangia pacifica
NCBI taxonomy Id: 311180
Other names: CGMCC 1.3455, DSM 26894, JCM 12573, Y. pacifica, Yangia pacifica Dai et al. 2006, alpha proteobacterium DX5-10, strain DX5-10
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.