STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFS76315.1ABC-type uncharacterized transport system, substrate-binding protein. (231 aa)    
Predicted Functional Partners:
SFS76300.1
ABC-type nickel/cobalt efflux system, permease component RcnA; Belongs to the NiCoT transporter (TC 2.A.52) family.
 
   
 0.969
SFS76286.1
Multidrug resistance protein, MATE family.
       0.694
SFS76330.1
TIGR02453 family protein.
       0.561
ychF
Hypothetical protein; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
       0.543
SFT11253.1
Uncharacterized conserved protein.
 
     0.534
SFS91433.1
Transglycosylase SLT domain-containing protein.
  
     0.529
SFS74853.1
Pectate lyase superfamily protein.
  
     0.433
SFT15624.1
Hypothetical protein.
  
     0.420
SFT07195.1
Chromosome partitioning protein, ParB family.
  
     0.410
Your Current Organism:
Yangia pacifica
NCBI taxonomy Id: 311180
Other names: CGMCC 1.3455, DSM 26894, JCM 12573, Y. pacifica, Yangia pacifica Dai et al. 2006, alpha proteobacterium DX5-10, strain DX5-10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.