STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cbbLRibulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily. (486 aa)    
Predicted Functional Partners:
SFS79830.1
Ribulose 1,5-bisphosphate carboxylase small subunit.
 
 
 0.998
SFS79718.1
Phosphoribulokinase.
 
 
 0.962
SFS79850.1
Probable Rubsico expression protein CbbX.
 
  
 0.891
SFS79765.1
Fructose-bisphosphate aldolase; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis.
 
  
 0.874
SFS79683.1
ModE molybdate transport repressor domain-containing protein; Belongs to the LysR transcriptional regulatory family.
 
   
 0.838
SFS39418.1
Carbonic anhydrase or acetyltransferase, isoleucine patch superfamily.
   
 
 0.775
SFT13529.1
Phenylacetic acid degradation protein.
   
 
 0.775
fbp-2
D-fructose 1,6-bisphosphatase; Belongs to the FBPase class 1 family.
 
  
 0.757
SFS79747.1
Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
  
 0.702
SFS79731.1
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
  
  
 0.662
Your Current Organism:
Yangia pacifica
NCBI taxonomy Id: 311180
Other names: CGMCC 1.3455, DSM 26894, JCM 12573, Y. pacifica, Yangia pacifica Dai et al. 2006, alpha proteobacterium DX5-10, strain DX5-10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.