STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFS80317.1NADP-dependent 3-hydroxy acid dehydrogenase YdfG; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (236 aa)    
Predicted Functional Partners:
SFS80332.1
DNA-binding transcriptional regulator, MarR family.
 
     0.940
SFS80299.1
Glycine/D-amino acid oxidase.
 
    0.841
SFS80282.1
Peptide/nickel transport system substrate-binding protein.
 
     0.835
SFS80218.1
Glycine/D-amino acid oxidase.
 
    0.818
SFT03550.1
3-oxoacyl-[acyl-carrier protein] reductase.
  
     0.744
SFS55260.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
  
     0.729
SFT25210.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
  
     0.726
SFS71263.1
7-alpha-hydroxysteroid dehydrogenase.
  
     0.724
SFS56609.1
3-oxoacyl-[acyl-carrier protein] reductase.
  
     0.715
SFT20131.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
  
     0.714
Your Current Organism:
Yangia pacifica
NCBI taxonomy Id: 311180
Other names: CGMCC 1.3455, DSM 26894, JCM 12573, Y. pacifica, Yangia pacifica Dai et al. 2006, alpha proteobacterium DX5-10, strain DX5-10
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