STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFS90286.1Hypothetical protein. (109 aa)    
Predicted Functional Partners:
SFS90303.1
OmpA-OmpF porin, OOP family.
 
     0.942
SFS90372.1
Hypothetical protein.
 
     0.876
SFS30673.1
Hypothetical protein.
  
     0.774
SFT15215.1
Hypothetical protein.
  
     0.773
SFS98770.1
SseB protein N-terminal domain-containing protein.
  
     0.772
SFS35407.1
Hypothetical protein.
  
     0.771
SFS53745.1
Hypothetical protein.
  
     0.771
ubiA
4-hydroxybenzoate polyprenyltransferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.
       0.770
SFS67651.1
Hypothetical protein.
  
     0.768
SFS71516.1
Membrane associated serine protease, rhomboid family.
  
     0.767
Your Current Organism:
Yangia pacifica
NCBI taxonomy Id: 311180
Other names: CGMCC 1.3455, DSM 26894, JCM 12573, Y. pacifica, Yangia pacifica Dai et al. 2006, alpha proteobacterium DX5-10, strain DX5-10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.