STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFS88757.1TadE-like protein. (178 aa)    
Predicted Functional Partners:
SFS88740.1
Flp pilus assembly protein TadG.
 
    0.973
SFS88772.1
Hypothetical protein.
 
    0.967
SFT20370.1
Pilus assembly protein CpaB.
 
  
 0.846
SFT20388.1
Pilus assembly protein CpaE.
 
  
 0.826
SFT20364.1
Hypothetical protein.
 
  
 0.804
SFS76162.1
Hypothetical protein.
  
    0.771
SFT25596.1
Sporulation related domain-containing protein.
 
     0.742
SFS41461.1
Hypothetical protein.
  
    0.737
SFT20377.1
Pilus assembly protein CpaC; Belongs to the bacterial secretin family.
 
  
 0.729
SFT20424.1
Prepilin peptidase CpaA.
 
  
 0.727
Your Current Organism:
Yangia pacifica
NCBI taxonomy Id: 311180
Other names: CGMCC 1.3455, DSM 26894, JCM 12573, Y. pacifica, Yangia pacifica Dai et al. 2006, alpha proteobacterium DX5-10, strain DX5-10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.