STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mcemethylmalonyl-CoA epimerase /ethylmalonyl-CoA epimerase. (134 aa)    
Predicted Functional Partners:
SFS67693.1
methylmalonyl-CoA mutase.
 
  
 0.994
SFS67612.1
propionyl-CoA carboxylase carboxyltransferase subunit.
 
 
 0.987
SFS67668.1
Biotin carboxyl carrier protein/biotin carboxylase.
 
 
 0.967
CcrA
crotonyl-CoA carboxylase/reductase.
    
 0.941
SFS90857.1
(R)-ethylmalonyl-CoA mutase.
 
   
 0.892
SFS97604.1
Predicted secreted protein.
       0.858
SFT23666.1
Homogentisate 1,2-dioxygenase.
  
 
 0.836
SFT20344.1
LAO/AO transport system kinase.
 
   
 0.803
SFS32960.1
3-methylcrotonyl-CoA carboxylase alpha subunit.
  
  
 0.620
SFS32942.1
3-methylcrotonyl-CoA carboxylase beta subunit.
  
  
 0.578
Your Current Organism:
Yangia pacifica
NCBI taxonomy Id: 311180
Other names: CGMCC 1.3455, DSM 26894, JCM 12573, Y. pacifica, Yangia pacifica Dai et al. 2006, alpha proteobacterium DX5-10, strain DX5-10
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