STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFS98158.1Protein of unknown function. (165 aa)    
Predicted Functional Partners:
SFS67375.1
Beta-barrel assembly machine subunit BamF.
  
     0.771
SFS98146.1
Outer membrane protein OmpU.
 
   
 0.727
SFS43832.1
Beta-barrel assembly machine subunit BamE.
  
     0.709
SFS98213.1
DNA polymerase III, delta subunit.
 
     0.692
leuS
leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.684
SFS71120.1
Ubiquinone biosynthesis protein COQ9.
  
     0.672
SFS98198.1
LPS-assembly lipoprotein.
 
     0.655
SFS89350.1
Penicillin-binding protein 2.
  
     0.608
SFT23312.1
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat.
  
    0.590
SFS73446.1
Hypothetical protein.
  
     0.581
Your Current Organism:
Yangia pacifica
NCBI taxonomy Id: 311180
Other names: CGMCC 1.3455, DSM 26894, JCM 12573, Y. pacifica, Yangia pacifica Dai et al. 2006, alpha proteobacterium DX5-10, strain DX5-10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.